As a general rule, the effect of a shorter wheelbase is toward faster steering and reduced straight-line stability.
That said, notice that Ducati uses a swingarm for all it's superbike models that has the same eccentric-to-swingarm pivot distance even though they have different front/rear standard sprocket sizes. They all use a standard 94-link chain. For example:
15/36 (916,996) (0mm)
14/36 (916SP) (+4mm)
14/37 (748SP,748SPS) (0mm)
14/38 (748) (-4mm)
So it's not a sensitive parameter.
Factory racebikes use a revised suspension linkage and a swingarm that's 15 - 30mm longer than production bikes for enhanced high-speed stability (at the sacrifice of cornering.) The shorter swingarm/wheelbase is considered better suited for street riding.