I wouldn't.
The 996 master cylinder diameter is 16 mm (area: 201 sq mm) and the 1198 34/34 calipers (area: 7263 sq mm) which gives a hydraulic ratio of 36 (7263/201).
A a point of reference, the 1198 uses a 18 mm master cylinder giving a stock hydraulic ratio of 28.5.
As a general guideline for multi piston brakes, the hydraulic ratio should be as follows to get the following modulation characteristics at the brake lever:
30:1 - soft (longer lever travel distance, Ducati's preference for safety)
27:1 - sweet spot
23:1 - firm
20:1 - wooden (short lever travel i.e., on/off, poor modulation)