Second one first. Looking at some older parts manuals, the breather appears to be the same as that used on the Pantah 600SL and 750 Paso.
And 750 Santa Monica
The first could be that a previous owner left the allen bolts in there. On the ST2 heads I have here (I need the cams), 2 of the 4 holes are threaded and the various parts manuals I have don't show any bolts there. I have made a plate and have a couple of bolts ready to use if the cam pulleys are a little stuck.
Others may have more ideas - the breather is a little odd on a 600SS motor unless it is very early and the factory were using up some left over parts.