These will give you some background on 996 fueling.
http://www.bikeboy.org/performance.html
BikeBoy.org - Ducati 996 Strada Eproms
Also, note that 996 low speed fueling problems are exacerbated by the 996 stock gearing. The 996 has a 1.84 primary ratio combined with a standard (non-close ratio) gearbox that makes it probably the highest geared stock Ducati ever.
I strongly recommend that ALL 996 owners change from the stock15/36 94-link chain to a 15/43 98-link setup (or the equivalent 14/40 96-links.)