Sofadriver...looks like you are on both threads...

As soon as the fuel light stopped flickering when I moved the harness I did the turn off the lights trick looking for arcing. I did not see any arcing at all. I ran my hand along the plug wire hoping to get zapped...nothing. I really feel that symptom was an induction cross talk type problem that was probably muddying the diagnosis.
If it were a carb'ed bike I would say it was clogged pilot and a lean pop...other than the flames shooting out the pipes. I've also seen a bad ignition module show similar symptoms. Other bikes though. I'm a duck newbie other than doing some valves on a 900SS. Sort of wondering about a clogged injector. will pull them friday and see what the spray pattern looks like.
The tube on the heat sync under the ignition module was unplugged. but the wires for the CDI were also drooped next to the plug wire. but still I don't think you'd get enough of a kick from the plug wire unless it was actually arcing. I don't see any evidence of arcing on the wire. no cracks,pinholes or arcing while revving and idling in the dark.
I've never taken a bike to a shop and I can fix the crap out of a particle accelerator....but i just don't know fuel injection bikes. I've very knowledgeable using electronic test equipment but I don't know what to look for. Any Stator, cdi, FI testing I can do without ducati's DDS module would be helpful. Harvest classic this weekend but looks like I'm riding the Harley...